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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77615583_77631527_R

Intron Information:

Intron Rank:
144564
Intron Class:
major
Intron Phase:
Intron Coordinates:
77615583 - 77631527
Intron Length:
15945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TGTTATTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.2
80.2
30.6
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
77.3
0.61
0.8
76.9
30.7
Minor 5ss
34.9
-1.7
2.7
40.9
45.4
Minor BPS
76.9
0.92
1.4
89.9
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025106
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047823
77615037 - 77637646
22610