About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77631603_77634416_R

Intron Information:

Intron Rank:
144559
Intron Class:
major
Intron Phase:
Intron Coordinates:
77631603 - 77634416
Intron Length:
2814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GTATAATTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
CCTTGTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
73.8
0.54
1
65.8
44.1
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
48.7
-0
2
67.75
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025106
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047823
77615037 - 77637646
22610
ENSAPLT00000035575
77627880 - 77637646
9767