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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77634019_77634416_R

Intron Information:

Intron Rank:
144556
Intron Class:
major
Intron Phase:
Intron Coordinates:
77634019 - 77634416
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
CATGTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
48.9
0
1.7
63.33
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025106
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026474
77633491 - 77635384
1894