About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77634465_77634820_R

Intron Information:

Intron Rank:
144554
Intron Class:
major
Intron Phase:
Intron Coordinates:
77634465 - 77634820
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTCCTTACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CATTCCTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.4
0.64
0.8
73.6
30
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
66.5
0.51
1.6
72.14
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025106
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045404
77632678 - 77635384
2707
ENSAPLT00000035575
77627880 - 77637646
9767
ENSAPLT00000026474
77633491 - 77635384
1894
ENSAPLT00000019889
77627880 - 77637646
9767
ENSAPLT00000047823
77615037 - 77637646
22610