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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77649309_77665578_R

Intron Information:

Intron Rank:
134189
Intron Class:
major
Intron Phase:
Intron Coordinates:
77649309 - 77665578
Intron Length:
16270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAGA
5'SS Class:
major
3'SS Sequence:
TTCTTTCATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
71.8
39.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.9
0.72
0.8
82
28.9
Minor 5ss
37.5
-1.4
2.4
43.5
43.5
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019489
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020934
77646856 - 77665704
18849