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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77715869_77717802_F

Intron Information:

Intron Rank:
144938
Intron Class:
major
Intron Phase:
Intron Coordinates:
77715869 - 77717802
Intron Length:
1934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGAAA
U12 Branch Point Sequence:
GTGGATTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.4
37.7
Major BPS
56.6
0.17
1.3
67.7
36.5
Major PPT
80.2
0.68
0.9
76.3
37.7
Minor 5ss
30.1
-2.3
2.6
34.1
41.4
Minor BPS
43.9
-0.4
1.7
50.19
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028146
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031859
77714775 - 77718480
3706
ENSAPLT00000024454
77714775 - 77721721
6947
ENSAPLT00000017365
77714775 - 77718059
3285