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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77717964_77718393_F

Intron Information:

Intron Rank:
144942
Intron Class:
major
Intron Phase:
Intron Coordinates:
77717964 - 77718393
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AATCTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.6
0.87
0.7
83.3
31.6
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
57.4
0.31
1.5
72.58
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028146
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031859
77714775 - 77718480
3706