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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77717964_77721654_F

Intron Information:

Intron Rank:
144940
Intron Class:
major
Intron Phase:
Intron Coordinates:
77717964 - 77721654
Intron Length:
3691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
GTATCTTTCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TACTTTTGGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
65.7
0.35
1.1
63.8
41.7
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
52.1
0.15
1.4
67.26
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028146
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024454
77714775 - 77721721
6947