Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77795635_77799430_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

77795635 - 77799430

Intron Length:

3796

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTATGGAGC

5'SS Class:

major

3'SS Sequence:

TTCATTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

AGTTTCTCAAAA

Flanking Amino Acid:

VNDNPPRFPQSTYQFNSPES

Intron Amino Acid Position:

271

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.6

0.27

1.1

54.2

43.2

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

0.79

0.8

37.1

Minor 5ss

-1.1

3.1

47.6

42.5

Minor BPS

58.4

0.26

1.6

68.24

37.4

Associated Gene:

Gene:

CDH9

Ensembl Gene ID:

ENSAPLG00000005927

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006173

77747384 - 77820358

72975