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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7780090_7810125_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7780090 - 7810125
Intron Length:
30036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
FNGLSDWLYEEEILKTHIAH
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
66
40.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
87.7
0.85
0.7
90
24.6
Minor 5ss
30.9
-2.2
3.3
41.2
45.5
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
DPP6
Ensembl Gene ID:
ENSAPLG00000008020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022795
7613822 - 7862491
248670
ENSAPLT00000020204
7654974 - 7862491
207518
ENSAPLT00000008356
7549629 - 7862491
312863