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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77833605_77836964_R

Intron Information:

Intron Rank:
137111
Intron Class:
major
Intron Phase:
Intron Coordinates:
77833605 - 77836964
Intron Length:
3360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
GAGACCTGACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
60.1
0.25
1
51
35.6
Major PPT
81.1
0.7
0.9
76.6
32
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
45.8
-0.3
1.7
50.13
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021262
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028949
77833299 - 77849336
16038