About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77837043_77849301_R

Intron Information:

Intron Rank:
137112
Intron Class:
major
Intron Phase:
Intron Coordinates:
77837043 - 77849301
Intron Length:
12259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.5
0.66
0.7
73.3
25
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
83.1
1.12
0.9
92.23
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021262
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042503
77827496 - 77852143
24648
ENSAPLT00000028949
77833299 - 77849336
16038