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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77851656_77863056_R

Intron Information:

Intron Rank:
137110
Intron Class:
major
Intron Phase:
Intron Coordinates:
77851656 - 77863056
Intron Length:
11401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCATGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGTCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.3
0.5
1
70.5
40.2
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
66.9
0.61
1.7
83.09
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021262
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027436
77849332 - 77863238
13907