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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77878808_77879767_R

Intron Information:

Intron Rank:
147223
Intron Class:
major
Intron Phase:
Intron Coordinates:
77878808 - 77879767
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTTCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77
33.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.3
0.77
0.8
79.6
31.8
Minor 5ss
40.4
-1.1
2.9
48.9
41.5
Minor BPS
66.6
0.6
1.6
78.81
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026529
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035347
77878636 - 77881977
3342
ENSAPLT00000034027
77878636 - 77880774
2139