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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77975846_77991013_F

Intron Information:

Intron Rank:
135026
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
77975846 - 77991013
Intron Length:
15168

Sequence Information:

Terminal Dinucleotides:
GT-GA
5'SS Sequence:
TTT|GTTATTTCT
5'SS Class:
weak_major
3'SS Sequence:
GGTGTAGGGGGGA|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATGTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.8
0.11
1.3
61.1
37.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
5.86
-2.5
3.9
19.9
36.4
Minor 5ss
41.8
-0.9
2.7
58.7
39.4
Minor BPS
51.3
0.12
1.8
70.84
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022637
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046568
77974804 - 77997327
22524