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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77975846_77997309_F

Intron Information:

Intron Rank:
135022
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
77975846 - 77997309
Intron Length:
21464

Sequence Information:

Terminal Dinucleotides:
GT-AT
5'SS Sequence:
TTT|GTTATTTCT
5'SS Class:
weak_major
3'SS Sequence:
CTTGATAATACAT|T
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TTTTCCTTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.8
0.11
1.3
61.1
37.8
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
40
-0.5
3.2
54.7
43.7
Minor 5ss
41.8
-0.9
2.7
58.7
39.4
Minor BPS
86.8
1.15
0.8
90.42
23.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022637
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043684
77974804 - 77997614
22811
ENSAPLT00000030835
77974804 - 77997614
22811