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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7810281_7811069_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7810281 - 7811069
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TATTGAAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTACCTTATTT
Flanking Amino Acid:
PTVKMYHYPKAGMENPTISL
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62.8
0.29
1
53.5
44.9
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
72.8
0.79
1.6
88.8
36.2

Associated Gene:

Gene:
DPP6
Ensembl Gene ID:
ENSAPLG00000008020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008356
7549629 - 7862491
312863
ENSAPLT00000022795
7613822 - 7862491
248670
ENSAPLT00000020204
7654974 - 7862491
207518