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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7816107_7817040_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7816107 - 7817040
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TGTTATTTAACA
Flanking Amino Acid:
CDATTGVCTKKHEDESEGWL
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73
38.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
85.1
0.79
0.8
84.6
30.4
Minor 5ss
29.5
-2.3
3.8
45.4
49.7
Minor BPS
74.3
0.76
1.4
81.26
33.6

Associated Gene:

Gene:
DPP6
Ensembl Gene ID:
ENSAPLG00000008020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020204
7654974 - 7862491
207518
ENSAPLT00000008356
7549629 - 7862491
312863
ENSAPLT00000022795
7613822 - 7862491
248670