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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7822859_7823406_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7822859 - 7823406
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
FYHIAMSSSQPNSSSDNLQS
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.6
42.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.3
0.73
1
80.8
36.6
Minor 5ss
30.2
-2.3
3.3
38.2
47
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
DPP6
Ensembl Gene ID:
ENSAPLG00000008020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020204
7654974 - 7862491
207518
ENSAPLT00000008356
7549629 - 7862491
312863
ENSAPLT00000022795
7613822 - 7862491
248670