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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78252865_78282784_R

Intron Information:

Intron Rank:
133025
Intron Class:
major
Intron Phase:
Intron Coordinates:
78252865 - 78282784
Intron Length:
29920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCATGTTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATCTTCTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
100
1.24
0.5
100
0
Major PPT
77.7
0.62
0.9
72.3
37.6
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
75.7
0.79
1.1
75.93
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018800
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021430
78252810 - 78286151
33342