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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78258541_78282784_R

Intron Information:

Intron Rank:
133027
Intron Class:
major
Intron Phase:
Intron Coordinates:
78258541 - 78282784
Intron Length:
24244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTCTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
83.4
0.75
0.8
79.9
31.1
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
63.5
0.42
1.6
76.13
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018800
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028406
78258501 - 78286151
27651