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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78259615_78285403_R

Intron Information:

Intron Rank:
133029
Intron Class:
major
Intron Phase:
Intron Coordinates:
78259615 - 78285403
Intron Length:
25789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTCTCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.5
0.6
0.9
71.2
38.7
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
71.4
0.65
1.6
81.62
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018800
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039226
78259549 - 78286151
26603