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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7827188_7846981_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7827188 - 7846981
Intron Length:
19794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
AGTTATTTAACT
Flanking Amino Acid:
NLEYFLLTCEGPRVPMVTVH
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
71.4
41.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
82.8
0.74
1
82.6
32.9
Minor 5ss
45.7
-0.5
2.5
58.3
46.4
Minor BPS
72.4
0.78
1.4
84.4
35.6

Associated Gene:

Gene:
DPP6
Ensembl Gene ID:
ENSAPLG00000008020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022795
7613822 - 7862491
248670
ENSAPLT00000020204
7654974 - 7862491
207518
ENSAPLT00000008356
7549629 - 7862491
312863