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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78373445_78373534_R

Intron Information:

Intron Rank:
145061
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
78373445 - 78373534
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTATGTTTG
5'SS Class:
weak_major
3'SS Sequence:
TTGTCTTTGAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTCTTTGAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
73.5
38
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
67.3
0.39
1.2
70.7
39.1
Minor 5ss
58.2
0.28
2.3
70.9
39.7
Minor BPS
68.2
0.57
1.4
75.09
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025442
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044931
78367843 - 78373643
5801