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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78405077_78409127_F

Intron Information:

Intron Rank:
146557
Intron Class:
major
Intron Phase:
Intron Coordinates:
78405077 - 78409127
Intron Length:
4051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TACTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.2
0.75
0.8
80.5
36.8
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
57.1
0.3
2
80.91
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029476
78399954 - 78410206
10253
ENSAPLT00000023896
78404324 - 78410206
5883