Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78409306_78410072_F

Intron Information:

Intron Rank:

146558

Intron Class:

major

Intron Phase:

Intron Coordinates:

78409306 - 78410072

Intron Length:

767

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCAA

5'SS Class:

strong_major

3'SS Sequence:

TTTATGTACCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTTATGTACCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

70.9

36.4

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

73.7

0.53

44.3

Minor 5ss

24.6

-2.9

28.8

43.6

Minor BPS

47.9

-0.1

2.4

70.69

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028960

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029476

78399954 - 78410206

10253

ENSAPLT00000023896

78404324 - 78410206

5883