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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78495569_78497321_F

Intron Information:

Intron Rank:
144095
Intron Class:
major
Intron Phase:
Intron Coordinates:
78495569 - 78497321
Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
ATTGCATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GGTTCATTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
77.6
0.62
0.9
70.4
39.6
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
62.9
0.4
1.7
72.23
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027662
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028226
78495300 - 78504896
9597