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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78497411_78504620_F

Intron Information:

Intron Rank:
144096
Intron Class:
major
Intron Phase:
Intron Coordinates:
78497411 - 78504620
Intron Length:
7210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAACTGG
5'SS Class:
major
3'SS Sequence:
CTTGATATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGCTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
55.7
44.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.9
0.63
0.9
74
40
Minor 5ss
42.7
-0.8
3
52.7
46.4
Minor BPS
70.1
0.71
1.2
79.17
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027662
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028226
78495300 - 78504896
9597