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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7851647_7854026_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7851647 - 7854026
Intron Length:
2380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTGCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTGCCT
Flanking Amino Acid:
EYMEIKIDDYKLPMQILKPA
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
81.4
0.71
0.8
77.1
37.1
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
DPP6
Ensembl Gene ID:
ENSAPLG00000008020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022795
7613822 - 7862491
248670
ENSAPLT00000020204
7654974 - 7862491
207518
ENSAPLT00000008356
7549629 - 7862491
312863