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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78644931_78648254_R

Intron Information:

Intron Rank:
134881
Intron Class:
major
Intron Phase:
Intron Coordinates:
78644931 - 78648254
Intron Length:
3324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTTTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.9
0.9
0.7
85.2
29.1
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
69.8
0.7
1.5
84.47
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019905
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044086
78644844 - 78648313
3470