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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78808880_78828798_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78808880 - 78828798
Intron Length:
19919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
TGSDYQYVGKLHSDQDKGDG
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
91.5
0.93
0.7
89.9
24.7
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
CDH10
Ensembl Gene ID:
ENSAPLG00000007403
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007760
78808649 - 78867918
59270