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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78829094_78837659_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78829094 - 78837659
Intron Length:
8566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGGATGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
CTATCTGAAACT
Flanking Amino Acid:
TASVPEMSVVGTSVVQVTAT
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
70.4
0.46
1
66.2
44.9
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
48.6
-0
2.3
71.91
45.4

Associated Gene:

Gene:
CDH10
Ensembl Gene ID:
ENSAPLG00000007403
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007760
78808649 - 78867918
59270