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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78843840_78846720_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78843840 - 78846720
Intron Length:
2881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTCTATT
5'SS Class:
major
3'SS Sequence:
TCTTCATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTAATTTAATA
Flanking Amino Acid:
TQEGIITVRKPLDYETRRLY
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
79.6
35.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.2
0.75
0.7
81.6
29.1
Minor 5ss
47.9
-0.2
2.5
68.3
42.6
Minor BPS
61.5
0.36
1.5
69.9
36.2

Associated Gene:

Gene:
CDH10
Ensembl Gene ID:
ENSAPLG00000007403
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007760
78808649 - 78867918
59270