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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78846975_78853048_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78846975 - 78853048
Intron Length:
6074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAC
5'SS Class:
major
3'SS Sequence:
TCTTTGTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATCCTTTTAACA
Flanking Amino Acid:
RDPDSASSPIRFSLDRHTDL
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.9
37.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.7
0.69
0.9
76.3
37.7
Minor 5ss
32.3
-2
3.1
42.2
44.6
Minor BPS
67.4
0.54
1.2
70.42
35.8

Associated Gene:

Gene:
CDH10
Ensembl Gene ID:
ENSAPLG00000007403
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007760
78808649 - 78867918
59270