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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78853186_78855358_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78853186 - 78855358
Intron Length:
2173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGCCAA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
AGCTCATTATTC
Flanking Amino Acid:
HNLSVIAAEINNPKDTTRVP
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
59.1
41.7
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
83.8
0.76
0.9
84.7
30.2
Minor 5ss
39.4
-1.2
3.1
53.1
44.8
Minor BPS
49.1
-0
1.8
58.66
40.4

Associated Gene:

Gene:
CDH10
Ensembl Gene ID:
ENSAPLG00000007403
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007760
78808649 - 78867918
59270