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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78855481_78864473_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78855481 - 78864473
Intron Length:
8993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATGT
Flanking Amino Acid:
FVCENARAGQLIQTISAVDK
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
41.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.3
0.73
0.7
78.1
23.9
Minor 5ss
49.9
-0
2.8
73.5
43.2
Minor BPS
51.2
0.11
2.3
79.06
43.7

Associated Gene:

Gene:
CDH10
Ensembl Gene ID:
ENSAPLG00000007403
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007760
78808649 - 78867918
59270