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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_78864594_78865340_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
78864594 - 78865340
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAT|GCCTGGCCC
5'SS Class:
weak_major
3'SS Sequence:
ATGAATTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
ATCTTATGAATT
Flanking Amino Acid:
TVQDNEGKIHQQRKVFKDTS
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.4
57.6
38
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
65.1
0.34
1
55
44.8
Minor 5ss
25.6
-2.8
4
38.8
39.5
Minor BPS
53.8
0.2
1.7
71.98
39.1

Associated Gene:

Gene:
CDH10
Ensembl Gene ID:
ENSAPLG00000007403
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007760
78808649 - 78867918
59270