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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7893143_7893563_R

Intron Information:

Intron Rank:
20
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
7893143 - 7893563
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
ATC|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TTAACAAGCATAC|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTCCTTAACA
Flanking Amino Acid:
GVLTQTLDYESYKFT*
Intron Amino Acid Position:
1069

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
29.1
-1.3
3.4
45.9
44.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
34
-0.9
3.1
40.1
37.9
Minor 5ss
97.1
1.57
0.7
90.7
20.5
Minor BPS
91.1
1.29
0.8
91.36
30.2

Associated Gene:

Gene:
PAXIP1
Ensembl Gene ID:
ENSAPLG00000007829
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008155
7893127 - 7927689
34563