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Intron Name: Anas_platyrhynchos_platyrhynchos_2_7895782_7897473_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7895782 - 7897473

Intron Length:

1692

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

CTGGTCTTAACA

Flanking Amino Acid:

EECFKCQKFVDEQNFVLRDA

Intron Amino Acid Position:

945

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

76.8

34.8

Major BPS

0.52

1.1

77.7

35.3

Major PPT

89.8

0.89

0.7

88.4

28.7

Minor 5ss

39.7

-1.2

2.8

46.7

43.9

Minor BPS

67.3

0.54

1.5

70.13

42.8

Associated Gene:

Gene:

PAXIP1

Ensembl Gene ID:

ENSAPLG00000007829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041814

7893518 - 7927689

34172

ENSAPLT00000008155

7893127 - 7927689

34563