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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79004362_79005065_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79004362 - 79005065
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTTCCATACTA
Flanking Amino Acid:
SLGRPRNREMGPEHEEAEDI
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
68.5
0.42
1
66.9
38.4
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
59.3
0.29
1.9
74.71
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034371
79003191 - 79010724
7534
ENSAPLT00000001562
79003191 - 79010660
7470