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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79009380_79010258_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79009380 - 79010258
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAATTG
5'SS Class:
major
3'SS Sequence:
AAATTCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTTCCCAAATT
Flanking Amino Acid:
ISDNTTGLELVERELTYEKL
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
67.6
38.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
71.3
0.48
1
63.8
41.6
Minor 5ss
41
-1
3.2
52.7
45.5
Minor BPS
58.7
0.35
2
80.27
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034371
79003191 - 79010724
7534
ENSAPLT00000001562
79003191 - 79010660
7470