About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79010512_79010608_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79010512 - 79010608
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGAGG
5'SS Class:
major
3'SS Sequence:
TCTTCTTTATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTCTTTATTA
Flanking Amino Acid:
HKAFVEVNEEGTTSPKPSSS
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.7
0.69
0.8
81.9
28.5
Minor 5ss
30.7
-2.2
3.3
40.3
45.4
Minor BPS
67.4
0.54
1.5
74.5
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034371
79003191 - 79010724
7534