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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79013248_79013676_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
79013248 - 79013676
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTTCTTTTTGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
75.2
0.57
1
70.2
41.3
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
42.5
-0.5
3.7
79.44
43

Associated Gene:

Gene:
SERPINB8
Ensembl Gene ID:
ENSAPLG00000012569
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013114
79013138 - 79020397
7260