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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79013855_79014814_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79013855 - 79014814
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGACAT
U12 Branch Point Sequence:
TGTCTTTCTACA
Flanking Amino Acid:
KGNTEAQIAKVLSLNKAEDA
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
51
0.03
1.1
58.7
38.1
Major PPT
85.7
0.8
0.8
80.2
32
Minor 5ss
44.9
-0.6
2.8
61.5
43.4
Minor BPS
47.4
-0.2
1.8
61.31
38.3

Associated Gene:

Gene:
SERPINB8
Ensembl Gene ID:
ENSAPLG00000012569
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013114
79013138 - 79020397
7260