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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79018480_79019393_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79018480 - 79019393
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTATGTAACT
Flanking Amino Acid:
IQDESTGLEKLERELTSEKL
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.5
0.89
0.7
88.9
28.2
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
53.4
0.19
2.1
76.53
39.8

Associated Gene:

Gene:
SERPINB8
Ensembl Gene ID:
ENSAPLG00000012569
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013114
79013138 - 79020397
7260