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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79022354_79024541_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79022354 - 79024541
Intron Length:
2188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCAAC
5'SS Class:
major
3'SS Sequence:
TCTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTCTTTTATTT
Flanking Amino Acid:
KGNTEAQVLKTLHFDEVEDI
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.2
73.5
37.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
90.4
0.91
0.7
89.1
26
Minor 5ss
36
-1.6
2.7
43.3
44
Minor BPS
57
0.3
1.5
73.36
38

Associated Gene:

Gene:
SERPINB1
Ensembl Gene ID:
ENSAPLG00000012958
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013521
79022178 - 79028659
6482