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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79024680_79025559_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79024680 - 79025559
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGTTTA
5'SS Class:
major
3'SS Sequence:
TTCCAAAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTGTCCTTATCA
Flanking Amino Acid:
FGEKSYSFLPDFLTNVQKLY
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
75.6
36.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
61.7
0.26
1
52.7
40.6
Minor 5ss
43.2
-0.7
3.1
58.2
46.4
Minor BPS
69.2
0.6
1.6
74.97
42.9

Associated Gene:

Gene:
SERPINB1
Ensembl Gene ID:
ENSAPLG00000012958
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013521
79022178 - 79028659
6482