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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79025678_79026421_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79025678 - 79026421
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTAC
5'SS Class:
strong_major
3'SS Sequence:
GTCCCCTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTATTGTGACT
Flanking Amino Acid:
INQWVEEKTEGKIPNLLSEG
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.7
34.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
64.4
0.32
1
63.8
31.6
Minor 5ss
43.5
-0.7
3
58.3
46.6
Minor BPS
52.7
0.17
2.1
78.82
37.8

Associated Gene:

Gene:
SERPINB1
Ensembl Gene ID:
ENSAPLG00000012958
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013521
79022178 - 79028659
6482