About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79026565_79027344_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79026565 - 79027344
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
TTTAACAATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTCTGTACCT
Flanking Amino Acid:
TVEMPFRLNKNERKTVKMMY
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.9
41
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
69.9
0.45
1
60.3
44.6
Minor 5ss
30.7
-2.2
3.1
38.3
46.6
Minor BPS
60.1
0.4
2.3
87.23
39

Associated Gene:

Gene:
SERPINB1
Ensembl Gene ID:
ENSAPLG00000012958
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013521
79022178 - 79028659
6482