Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7903502_7904903_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7903502 - 7904903

Intron Length:

1402

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGGAAA

5'SS Class:

major

3'SS Sequence:

TTTCTTTCTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACCTAT

U12 Branch Point Sequence:

TCTACTTTCAGT

Flanking Amino Acid:

PPGGKPCSQHIISVTGFVDS

Intron Amino Acid Position:

715

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

76.9

33.2

Major BPS

0.27

1.3

58.7

39.9

Major PPT

88.3

0.86

0.6

85.2

22.2

Minor 5ss

-1.8

3.2

44.1

43.8

Minor BPS

49.8

0.07

2.1

71.79

45.5

Associated Gene:

Gene:

PAXIP1

Ensembl Gene ID:

ENSAPLG00000007829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041814

7893518 - 7927689

34172

ENSAPLT00000008155

7893127 - 7927689

34563